Digital Seashells and David Raup

My love of snail shells did not begin at a young age. This is not a story of a 6-year old boy discovering his first shell on an idyllic sandy beach. The year was 1998. I was 23 and in the first semester of graduate school. I was not sitting in the sand with the smells and sounds of the ocean washing over me. Instead, I was surrounded by the cement, cinder block walls of an interior lab of a architecturally emotionless university during a harsh Boston winter. Yet here, I was inspired by two papers from the 1960’s by David Raup, demonstrating that the shape, and beauty, of a snail’s shell could be described mathematically. From these papers my love of snail shells, and eventually mollusks in general, blossomed.

4911Snail shells have a very important feature—they spiral logarithmically. This feature was noted Greek philosophers, Christopher Wren, and expounded on in depth in 1917 by D’Arcy Thompson in his seminal book On Growth and Form. In a very crude sense, these early tomes provide the first steps into actually representing the entirety of a shell’s shape with numbers. Raup in the 1960’s devised a model with four parameters that went far beyond a simple line drawing in a single plane (Raup 1961, Raup 1962Raup 1966).

ExtruderThe first parameter was the shape of the generating curve. Imagine a tube of Play-Doh extruded from press. We could have a different mold to give this tube different shapes and ridges. This is the shape of the generating curve.

uvaWThe next parameters deal with the actual spiraling of this tube. If the tube is bent around an axis, how far does this tube move away from the axis with each turn? This is the variable D, the distance from the axis. If the value is zero then tube produces a coiled cylindrical shell, similar to the  shells just above, but if the value is greater than zero the shell gets a little wider with each whorl becoming triangular.

The third value, W, is the whorl expansion rate expressing how much the tube’s diameter increases as it spirals. The fourth, T, is the translation rate quantifying how that tube moves vertically (D is the horizontal movement) with each subsequent whorl. Nowhere are these parameters better explained than in Raup’s original work.

Screen Shot 2015-07-16 at 12.08.36 PM

But the true beauty of Raup’s model was that each species could have its own unique set of parameter values.

Screen Shot 2015-07-16 at 12.12.19 PMYou can envision calculating the values for D, T, and W for each snail and plotting them in a three-dimensional space with the axes corresponding to Raup’s parameters. If we did this would some parts of this space be uninhabited?. As stated by Raup himself,

Do the relatively unused regions represent physiologically impossible shell forms or has the evolution of these taxa simply not had sufficient time in which to populate the entire [region]?

Screen Shot 2015-07-16 at 12.41.41 PMIn doing this, Raup had launched a new courses of study focused on using both mathematical models to explore organismal shape and where organisms did and did not exist in these spaces. We now refer to these spaces in which species can be placed as morphospaces. These morphospaces can be any number of dimensions and defined by the different metrics of the morphology of an organism.

David Raup passed away last Thursday after a long, productive, and inspiring career. His research on extinctions and biodiversity are heralded as transformational in the field of paleontology. What will receive less attention, but touched me the most, was his little model to measure the shape of snails.  Raup’s snail model papers inspired a wide diversity of research after including: how crinoids have occupied different regions of their morphospace through time, how coral growth and branching can be mathematically modelled, morphospace recovery after extinctions in ammonoid, and more complex representations of shell shape.

30-copyRaup’s papers even inspired one intrepid, young graduate student holed up in lab to explore how the deepest parts of the oceans impact shell shape. This project that took me several years and found me x-raying millimeter size shells so I could see internal growth patterns to parameterize Raup’s variables. Years ago while visiting the University of Chicago, Raup’s old stomping grounds, I noticed the same print on several of the graduate students’ and postdoctoral fellows’ walls. I of course was drawn to the image with mouth agape. The images were original prints from the negative of figure four from Raup’s 1966 paper—the shell morphospace. Multiple prints were found in box in the department long after Raup had retired. I still covet those prints immensely.

From McClain et al. 2004

From McClain et al. 2004

 

Dr. M (1771 Posts)

Craig McClain is the Executive Director of the Lousiana University Marine Consortium. He has conducted deep-sea research for 20 years and published over 50 papers in the area. He has participated in and led dozens of oceanographic expeditions taken him to the Antarctic and the most remote regions of the Pacific and Atlantic. Craig’s research focuses on how energy drives the biology of marine invertebrates from individuals to ecosystems, specifically, seeking to uncover how organisms are adapted to different levels of carbon availability, i.e. food, and how this determines the kinds and number of species in different parts of the oceans. Additionally, Craig is obsessed with the size of things. Sometimes this translated into actually scientific research. Craig’s research has been featured on National Public Radio, Discovery Channel, Fox News, National Geographic and ABC News. In addition to his scientific research, Craig also advocates the need for scientists to connect with the public and is the founder and chief editor of the acclaimed Deep-Sea News (http://deepseanews.com/), a popular ocean-themed blog that has won numerous awards. His writing has been featured in Cosmos, Science Illustrated, American Scientist, Wired, Mental Floss, and the Open Lab: The Best Science Writing on the Web.


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2 comments on “Digital Seashells and David Raup
  1. My first paying gig as a programmer in the late ’70s was working for Leicester University, writing a program to draw (on a line printer!) shells based on Raup’s model. Rest in peace, Mr Raup,

  2. You might be interested to know that Dave Raup (my husband) continued in retirement using with the mathematics of his coiling models to create beautiful computer-generated art work. View the same at Imagekind.com.

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